If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 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=> 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ), 'gf_id' => 'HOM05D000665', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000665' ), 'data_identifier' => 'HOM05D000665', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000665', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20140' => 'bna', 'A02p24550' => 'bna', 'A03p03850' => 'bna', 'A04p19300' => 'bna', 'A04p19310' => 'bna', 'A09p44350' => 'bna', 'Aa31LG4G5910' => 'aar', 'Aa31LG5G1880' => 'aar', 'Aa31sc83G50' => 'aar', 'Actinidia03712' => 'ach', 'Actinidia03865' => 'ach', 'Actinidia03973' => 'ach', 'Actinidia15412' => 'ach', 'Actinidia16978' => 'ach', 'Actinidia17423' => 'ach', 'Actinidia17424' => 'ach', 'Actinidia22985' => 'ach', 'Actinidia23623' => 'ach', 'Actinidia25827' => 'ach', 'Actinidia25828' => 'ach', 'Actinidia36755' => 'ach', 'Ah.12g055190' => 'amhyb', 'Ah.15g097210' => 'amhyb', 'AL4G16040' => 'aly', 'AL6G50920' => 'aly', 'Aqoxy1G00439' => 'aox', 'Aqoxy1G03359' => 'aox', 'Aqoxy1G03381' => 'aox', 'Aqoxy2G02850' => 'aox', 'Aqoxy2G02851' => 'aox', 'Aqoxy3G01557' => 'aox', 'Aqoxy3G01876' => 'aox', 'Aqoxy3G02664' => 'aox', 'Aqoxy5G00628' => 'aox', 'Aqoxy5G01214' => 'aox', 'Aqoxy5G01448' => 'aox', 'Aqoxy5G02335' => 'aox', 'Aqoxy6G00098' => 'aox', 'Aqoxy6G02200' => 'aox', 'Aqoxy6G02328' => 'aox', 'Aqoxy6G02800' => 'aox', 'Aqoxy7G01077' => 'aox', 'Aqoxy7G01815' => 'aox', 'Aqoxy7G02014' => 'aox', 'arahy.Tifrunner.gnm1.ann1.04U1FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0EBI7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2612I3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61NS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W2GBC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AKJ706' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDR352' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6T3XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV6FG9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNEK2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH35TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQJ7DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4VSGN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7W5CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV83RA' => 'arhy', 'AT2G24960' => 'ath', 'AT4G02210' => 'ath', 'ATR0049G017' => 'atr', 'ATR0081G006' => 'atr', 'ATR0081G057' => 'atr', 'ATR0326G061' => 'atr', 'ATR0559G225' => 'atr', 'ATR0582G270' => 'atr', 'ATR0585G101' => 'atr', 'ATR0693G289' => 'atr', 'ATR0709G032' => 'atr', 'ATR0712G032' => 'atr', 'ATR0721G164' => 'atr', 'ATR0724G093' => 'atr', 'ATR0743G125' => 'atr', 'ATR0776G040' => 'atr', 'ATR0776G057' => 'atr', 'ATR0807G051' => 'atr', 'ATR1089G093' => 'atr', 'ATR1098G111' => 'atr', 'Atru.chr12.2093' => 'acertr', 'Atru.chr13.313' => 'acertr', 'Atru.chr2.462' => 'acertr', 'Atru.chr3.852' => 'acertr', 'Atru.chr5.1075' => 'acertr', 'Atru.chr5.3284' => 'acertr', 'Atru.chr7.2549' => 'acertr', 'AUR62003340' => 'cqu', 'AUR62012087' => 'cqu', 'AUR62019459' => 'cqu', 'AUR62029497' => 'cqu', 'AUR62036171' => 'cqu', 'AUR62039377' => 'cqu', 'BcaB01g00532' => 'bca', 'BcaB01g05595' => 'bca', 'BcaB04g18365' => 'bca', 'BcaB05g23607' => 'bca', 'BcaB05g24932' => 'bca', 'BcaB06g28022' => 'bca', 'BcaB06g28024' => 'bca', 'BcaB06g28026' => 'bca', 'BcaC02g08393' => 'bca', 'BcaC03g15609' => 'bca', 'BcaC03g16109' => 'bca', 'BolC2t09325H' => 'bol', 'BolC2t09895H' => 'bol', 'BolC3t12967H' => 'bol', 'BolC4t27021H' => 'bol', 'BolC8t50271H' => 'bol', 'BraA02t07049Z' => 'bra', 'BraA02t07447Z' => 'bra', 'BraA03t09732Z' => 'bra', 'BraA04t17527Z' => 'bra', 'BraA04t17528Z' => 'bra', 'BraA04t17529Z' => 'bra', 'C02p33790' => 'bna', 'C02p38790' => 'bna', 'C03p04340' => 'bna', 'C04p54760' => 'bna', 'C08p26580' => 'bna', 'CAN.G1721.3' => 'can', 'CAN.G25.12' => 'can', 'CAN.G576.1' => 'can', 'CANSAT01G0669' => 'cansat', 'CANSAT01G1528' => 'cansat', 'CANSAT21G0626' => 'cansat', 'CANSAT25G0660' => 'cansat', 'CANSAT25G1420' => 'cansat', 'CANSAT25G2307' => 'cansat', 'CANSAT25G2398' => 'cansat', 'CANSAT25G3151' => 'cansat', 'CANSAT35G1351' => 'cansat', 'CANSAT54G0360' => 'cansat', 'CANSAT54G2806' => 'cansat', 'CANSAT64G0977' => 'cansat', 'CANSAT64G1510' => 'cansat', 'CANSAT78G2452' => 'cansat', 'CARHR069080' => 'chi', 'CARHR116760' => 'chi', 'CARHR204560' => 'chi', 'CARHR250430' => 'chi', 'Carub.0002s2252' => 'cru', 'Carub.0004s0452' => 'cru', 'Carub.0006s3495' => 'cru', 'Ca_02662_v3' => 'car', 'Ca_09908_v3' => 'car', 'Ca_11671_v3' => 'car', 'Ca_13411_v3' => 'car', 'Ca_13420_v3' => 'car', 'Ca_14593_v3' => 'car', 'Ca_24919_v3' => 'car', 'Cc01_g06590' => 'ccan', 'Cc01_g10760' => 'ccan', 'Cc07_g11040' => 'ccan', 'Cc07_g19720' => 'ccan', 'Cc10_g01810' => 'ccan', 'CDE02G1726' => 'cde', 'CDE04G0042' => 'cde', 'CDE04G0179' => 'cde', 'CDE04G2186' => 'cde', 'CDE04G2523' => 'cde', 'CDE04G3732' => 'cde', 'CDE07G0780' => 'cde', 'CDE07G1043' => 'cde', 'CDE08G0001' => 'cde', 'CDE08G1498' => 'cde', 'Cfa005219' => 'cfa', 'Cfa006558' => 'cfa', 'Cfa006999' => 'cfa', 'Cfa013030' => 'cfa', 'Cfa013937' => 'cfa', 'Cfa020931' => 'cfa', 'Ciclev10000218m.g' => 'ccl', 'Ciclev10001935m.g' => 'ccl', 'Ciclev10010556m.g' => 'ccl', 'Ciclev10019662m.g' => 'ccl', 'Ciclev10028943m.g' => 'ccl', 'CiPaw.04G149600' => 'cil', 'CiPaw.05G079800' => 'cil', 'CiPaw.07G113300' => 'cil', 'CiPaw.07G151500' => 'cil', 'CiPaw.07G231300' => 'cil', 'CiPaw.08G130400' => 'cil', 'CiPaw.15G145500' => 'cil', 'CiPaw.15G186000' => 'cil', 'ClCG03G012420' => 'cla', 'ClCG03G016790' => 'cla', 'ClCG05G016170' => 'cla', 'ClCG05G018360' => 'cla', 'ClCG09G005450' => 'cla', 'COL.COLO4_05955' => 'col', 'COL.COLO4_06628' => 'col', 'COL.COLO4_07541' => 'col', 'COL.COLO4_11921' => 'col', 'COL.COLO4_13013' => 'col', 'COL.COLO4_13504' => 'col', 'COL.COLO4_16082' => 'col', 'COL.COLO4_17303' => 'col', 'COL.COLO4_18963' => 'col', 'COL.COLO4_22459' => 'col', 'COL.COLO4_23291' => 'col', 'COL.COLO4_29519' => 'col', 'COL.COLO4_35899' => 'col', 'Cpa.g.sc1059.2' => 'cpa', 'Cpa.g.sc148.33' => 'cpa', 'Cpa.g.sc151.40' => 'cpa', 'Cpa.g.sc37.168' => 'cpa', 'Cpa.g.sc48.26' => 'cpa', 'Cpa.g.sc6.284' => 'cpa', 'CsaV3_1G039180' => 'csa', 'CsaV3_1G043570' => 'csa', 'CsaV3_1G043580' => 'csa', 'CsaV3_1G043590' => 'csa', 'CsaV3_4G036440' => 'csa', 'CsaV3_7G029640' => 'csa', 'CSS0000387' => 'camsi', 'CSS0001337' => 'camsi', 'CSS0004715' => 'camsi', 'CSS0005458' => 'camsi', 'CSS0006190' => 'camsi', 'CSS0007077' => 'camsi', 'CSS0007117' => 'camsi', 'CSS0008427' => 'camsi', 'CSS0009073' => 'camsi', 'CSS0011103' => 'camsi', 'CSS0011483' => 'camsi', 'CSS0011559' => 'camsi', 'CSS0015007' => 'camsi', 'CSS0017726' => 'camsi', 'CSS0018305' => 'camsi', 'CSS0020205' => 'camsi', 'CSS0022833' => 'camsi', 'CSS0023346' => 'camsi', 'CSS0023692' => 'camsi', 'CSS0026262' => 'camsi', 'CSS0028686' => 'camsi', 'CSS0029683' => 'camsi', 'CSS0030989' => 'camsi', 'CSS0031710' => 'camsi', 'CSS0034992' => 'camsi', 'CSS0037006' => 'camsi', 'CSS0039140' => 'camsi', 'CSS0040410' => 'camsi', 'CSS0041063' => 'camsi', 'CSS0046487' => 'camsi', 'CSS0047450' => 'camsi', 'CSS0047963' => 'camsi', 'CSS0049933' => 'camsi', 'DCAR_014037' => 'dca', 'DCAR_017475' => 'dca', 'DCAR_019945' => 'dca', 'DCAR_020933' => 'dca', 'Dinv02799' => 'din', 'Dinv03259' => 'din', 'Dinv03607' => 'din', 'Dinv04945' => 'din', 'Dinv07014' => 'din', 'Dinv08896' => 'din', 'Dinv10028' => 'din', 'Dinv10284' => 'din', 'Dinv11881' => 'din', 'Dinv15837' => 'din', 'Dinv15874' => 'din', 'Dinv21916' => 'din', 'Dinv23965' => 'din', 'Dinv25068' => 'din', 'Dinv26864' => 'din', 'Dinv28568' => 'din', 'Dinv29345' => 'din', 'Dinv33085' => 'din', 'Dinv33623' => 'din', 'Dinv33653' => 'din', 'Dinv39109' => 'din', 'Dinv41959' => 'din', 'Dinv43770' => 'din', 'Duzib093G1345' => 'dzi', 'Duzib116G0030' => 'dzi', 'Duzib132G1144' => 'dzi', 'Duzib138G0087' => 'dzi', 'Duzib147G0627' => 'dzi', 'Duzib147G1337' => 'dzi', 'Duzib168G0826' => 'dzi', 'Duzib177G0054' => 'dzi', 'Duzib187G0414' => 'dzi', 'ECA240G0036' => 'eca', 'ECA240G4363' => 'eca', 'EL10Ac2g04750' => 'bvu', 'EL10Ac4g08226' => 'bvu', 'EL10Ac6g15525' => 'bvu', 'Eucgr.A00912' => 'egr', 'Eucgr.B02483' => 'egr', 'Eucgr.B02784' => 'egr', 'Eucgr.B02958' => 'egr', 'Eucgr.C01733' => 'egr', 'Eucgr.C04039' => 'egr', 'Eucgr.E03218' => 'egr', 'Eucgr.E03604' => 'egr', 'Eucgr.E03640' => 'egr', 'Eucgr.F00294' => 'egr', 'Eucgr.F01358' => 'egr', 'Eucgr.F03745' => 'egr', 'Eucgr.G00498' => 'egr', 'Eucgr.G02213' => 'egr', 'Eucgr.H00842' => 'egr', 'Eucgr.H01077' => 'egr', 'Eucgr.H04051' => 'egr', 'Eucgr.I00904' => 'egr', 'Eucgr.J02681' => 'egr', 'Eucgr.K00902' => 'egr', 'Eucgr.K03095' => 'egr', 'Eucgr.K03150' => 'egr', 'Eucgr.L00423' => 'egr', 'Eucgr.L02702' => 'egr', 'Eucgr.L02923' => 'egr', 'FAN08G1549' => 'fan', 'FAN08G1969' => 'fan', 'FAN08G3553' => 'fan', 'FAN09G3992' => 'fan', 'FAN12G2945' => 'fan', 'FAN13G2749' => 'fan', 'FAN15G1296' => 'fan', 'FAN19G1518' => 'fan', 'FAN19G1575' => 'fan', 'FAN20G1516' => 'fan', 'FAN24G0085' => 'fan', 'FAN24G3328' => 'fan', 'FAN24G3347' => 'fan', 'FAN25G1869' => 'fan', 'FAN26G1049' => 'fan', 'FAN27G0927' => 'fan', 'FAN27G2099' => 'fan', 'FAN27G2725' => 'fan', 'FAN28G2660' => 'fan', 'FvH4_1g11471' => 'fve', 'FvH4_1g20120' => 'fve', 'FvH4_2g13781' => 'fve', 'FvH4_2g38651' => 'fve', 'FvH4_2g38660' => 'fve', 'FvH4_4g15662' => 'fve', 'FvH4_6g32032' => 'fve', 'Glyma.01G164400' => 'gma', 'Glyma.02G156600' => 'gma', 'Glyma.02G179401' => 'gma', 'Glyma.02G193300' => 'gma', 'Glyma.03G049000' => 'gma', 'Glyma.03G069900' => 'gma', 'Glyma.03G217200' => 'gma', 'Glyma.04G060100' => 'gma', 'Glyma.04G130400' => 'gma', 'Glyma.05G095150' => 'gma', 'Glyma.05G095200' => 'gma', 'Glyma.05G097200' => 'gma', 'Glyma.05G132400' => 'gma', 'Glyma.06G060551' => 'gma', 'Glyma.06G060600' => 'gma', 'Glyma.06G154900' => 'gma', 'Glyma.06G254400' => 'gma', 'Glyma.07G209700' => 'gma', 'Glyma.07G234900' => 'gma', 'Glyma.08G025200' => 'gma', 'Glyma.08G267100' => 'gma', 'Glyma.08G270500' => 'gma', 'Glyma.08G287150' => 'gma', 'Glyma.08G295300' => 'gma', 'Glyma.09G072800' => 'gma', 'Glyma.09G072900' => 'gma', 'Glyma.09G131700' => 'gma', 'Glyma.10G083600' => 'gma', 'Glyma.10G096120' => 'gma', 'Glyma.10G175800' => 'gma', 'Glyma.11G078600' => 'gma', 'Glyma.11G158600' => 'gma', 'Glyma.11G208100' => 'gma', 'Glyma.11G226600' => 'gma', 'Glyma.13G077400' => 'gma', 'Glyma.14G106300' => 'gma', 'Glyma.16G081300' => 'gma', 'Glyma.16G125050' => 'gma', 'Glyma.17G193900' => 'gma', 'Glyma.17G257300' => 'gma', 'Glyma.18G030600' => 'gma', 'Glyma.18G141600' => 'gma', 'Glyma.19G070100' => 'gma', 'Glyma.19G213802' => 'gma', 'Glyma.20G028300' => 'gma', 'Glyma.20G214700' => 'gma', 'Gohir.A01G166000' => 'ghi', 'Gohir.A05G060500' => 'ghi', 'Gohir.A05G187000' => 'ghi', 'Gohir.A08G041400' => 'ghi', 'Gohir.A08G041433' => 'ghi', 'Gohir.A08G211300' => 'ghi', 'Gohir.A08G211400' => 'ghi', 'Gohir.A11G173600' => 'ghi', 'Gohir.D01G157200' => 'ghi', 'Gohir.D05G075500' => 'ghi', 'Gohir.D05G189900' => 'ghi', 'Gohir.D08G051332' => 'ghi', 'Gohir.D08G051354' => 'ghi', 'Gohir.D08G051376' => 'ghi', 'Gohir.D08G051400' => 'ghi', 'Gohir.D08G228100' => 'ghi', 'Gohir.D08G228200' => 'ghi', 'Gohir.D11G180700' => 'ghi', 'Gorai.002G195300' => 'gra', 'Gorai.004G051300' => 'gra', 'Gorai.004G051400' => 'gra', 'Gorai.004G242300' => 'gra', 'Gorai.007G192500' => 'gra', 'Gorai.009G076900' => 'gra', 'Gorai.009G195200' => 'gra', 'GSVIVG01000025001' => 'vvi', 'GSVIVG01000255001' => 'vvi', 'GSVIVG01009883001' => 'vvi', 'GSVIVG01018738001' => 'vvi', 'GSVIVG01024053001' => 'vvi', 'GSVIVG01028065001' => 'vvi', 'GSVIVG01035986001' => 'vvi', 'GSVIVG01038689001' => 'vvi', 'HanXRQChr03g0084731' => 'han', 'HanXRQChr10g0285541' => 'han', 'HanXRQChr13g0396681' => 'han', 'Haze_02167' => 'cav', 'Haze_03733' => 'cav', 'Haze_03773' => 'cav', 'Haze_04223' => 'cav', 'Haze_04987' => 'cav', 'Haze_20106' => 'cav', 'Haze_21389' => 'cav', 'Haze_22620' => 'cav', 'Haze_23288' => 'cav', 'Haze_23291' => 'cav', 'Hma1.2p1_0026F.1_g016430' => 'hma', 'Hma1.2p1_0258F.1_g104230' => 'hma', 'Hma1.2p1_0494F.1_g165560' => 'hma', 'Hma1.2p1_0638F.1_g193770' => 'hma', 'Hma1.2p1_0869F.1_g230710' => 'hma', 'Hma1.2p1_0869F.1_g230715' => 'hma', 'Hma1.2p1_0890F.1_g233030' => 'hma', 'Hma1.2p1_0969F.1_g242610' => 'hma', 'Hma1.2p1_0979F.1_g243550' => 'hma', 'Hma1.2p1_1362F.1_g278230' => 'hma', 'Hma1.2p1_1786F.1_g302300' => 'hma', 'Hma1.2p1_2380F.1_g320966' => 'hma', 'Hund05198' => 'sun', 'Hund07193' => 'sun', 'Hund13763' => 'sun', 'Hund19303' => 'sun', 'Lalb_Chr04g0259891' => 'lal', 'Lalb_Chr06g0172711' => 'lal', 'Lalb_Chr11g0063491' => 'lal', 'Lalb_Chr15g0080181' => 'lal', 'Lalb_Chr24g0401881' => 'lal', 'Lalb_Chr24g0401891' => 'lal', 'Lj1g0000640' => 'lja', 'Lj1g0005320' => 'lja', 'Lj1g0008089' => 'lja', 'Lj1g0009979' => 'lja', 'Lj1g0011582' => 'lja', 'Lj1g0016372' => 'lja', 'Lj1g0017274' => 'lja', 'Lj1g0024899' => 'lja', 'Lj2A1201T49' => 'lonja', 'Lj2g0022922' => 'lja', 'Lj2g0027355' => 'lja', 'Lj3g0017321' => 'lja', 'Lj4C833G3' => 'lonja', 'Lj4E834T0' => 'lonja', 'Lj5C559G3' => 'lonja', 'Lj5g0011828' => 'lja', 'Lj5g0012691' => 'lja', 'Lj5g0014380' => 'lja', 'Lj5g0019690' => 'lja', 'Lj5g0026385' => 'lja', 'Lj6C264T4' => 'lonja', 'Lj6g0001109' => 'lja', 'Lj6g0024114' => 'lja', 'Lj7A675G36' => 'lonja', 'Lj7A736G85' => 'lonja', 'Lj7C473G5' => 'lonja', 'Lj7C736T17' => 'lonja', 'Lsat_1_v5_gn_5_155201' => 'lsa', 'Lsat_1_v5_gn_6_77601' => 'lsa', 'Lsat_1_v5_gn_9_440' => 'lsa', 'Manes.01G148400' => 'mes', 'Manes.05G000700' => 'mes', 'Manes.05G148700' => 'mes', 'Manes.08G122600' => 'mes', 'Manes.11G096000' => 'mes', 'Manes.13G154501' => 'mes', 'Manes.16G131100' => 'mes', 'Manes.18G014700' => 'mes', 'MBI02_g21882_MAGBIO' => 'mbi', 'MBI04_g27247_MAGBIO' => 'mbi', 'MBI05_g30026_MAGBIO' => 'mbi', 'MBI05_g31854_MAGBIO' => 'mbi', 'MBI06_g04700_MAGBIO' => 'mbi', 'MBI08_g14976_MAGBIO' => 'mbi', 'MBI09_g15189_MAGBIO' => 'mbi', 'MBI09_g15190_MAGBIO' => 'mbi', 'MBI10_g42606_MAGBIO' => 'mbi', 'MBI10_g42608_MAGBIO' => 'mbi', 'MBI13_g43752_MAGBIO' => 'mbi', 'MBI14_g21461_MAGBIO' => 'mbi', 'MBI14_g21462_MAGBIO' => 'mbi', 'MBI15_g44991_MAGBIO' => 'mbi', 'MBI16_g03096_MAGBIO' => 'mbi', 'MBI16_g18429_MAGBIO' => 'mbi', 'MBI18_g11288_MAGBIO' => 'mbi', 'MBI18_g14472_MAGBIO' => 'mbi', 'MBI19_g03252_MAGBIO' => 'mbi', 'MBI19_g37512_MAGBIO' => 'mbi', 'MBI19_g41922_MAGBIO' => 'mbi', 'MD03G1298700' => 'mdo', 'MD04G1207700' => 'mdo', 'MD08G1014200' => 'mdo', 'MD12G1043800' => 'mdo', 'MD14G1042600' => 'mdo', 'MD15G1042400' => 'mdo', 'Medtr0014s0040' => 'mtr', 'Medtr1g024830' => 'mtr', 'Medtr1g055365' => 'mtr', 'Medtr1g077100' => 'mtr', 'Medtr3g045460' => 'mtr', 'Medtr3g070080' => 'mtr', 'Medtr5g022570' => 'mtr', 'Medtr5g086320' => 'mtr', 'Medtr7g061400' => 'mtr', 'Medtr7g102860' => 'mtr', 'MELO3C015097.2' => 'cme', 'MELO3C015342.2' => 'cme', 'MELO3C015957.2' => 'cme', 'MELO3C016950.2' => 'cme', 'MELO3C025416.2' => 'cme', 'Migut.A00363' => 'egut', 'Migut.C00054' => 'egut', 'Migut.C00134' => 'egut', 'Migut.C00808' => 'egut', 'Migut.D00117' => 'egut', 'Migut.H02178' => 'egut', 'MSTRG.1202' => 'ama', 'MSTRG.18129' => 'ama', 'MSTRG.23230' => 'ama', 'MSTRG.25235' => 'ama', 'MSTRG.25238' => 'ama', 'MSTRG.25827' => 'ama', 'MSTRG.2726' => 'ama', 'Nitab4.5_0000188g0050' => 'nta', 'Nitab4.5_0000188g0150' => 'nta', 'Nitab4.5_0001936g0100' => 'nta', 'Nitab4.5_0002298g0010' => 'nta', 'Nitab4.5_0002337g0110' => 'nta', 'Nitab4.5_0002473g0020' => 'nta', 'Nitab4.5_0003022g0040' => 'nta', 'Nitab4.5_0011673g0010' => 'nta', 'Nitab4.5_0014425g0010' => 'nta', 'Nn1g00688' => 'nnu', 'Nn1g01996' => 'nnu', 'Nn1g02281' => 'nnu', 'Nn1g02527' => 'nnu', 'Nn1g06485' => 'nnu', 'Nn1g08111' => 'nnu', 'Nn1g08453' => 'nnu', 'Nn1g08682' => 'nnu', 'Nn2g10625' => 'nnu', 'Nn2g12467' => 'nnu', 'Nn2g14028' => 'nnu', 'Nn2g14429' => 'nnu', 'Nn2g14680' => 'nnu', 'Nn2g15109' => 'nnu', 'Nn3g16139' => 'nnu', 'Nn3g19280' => 'nnu', 'Nn3g20404' => 'nnu', 'Nn3g20636' => 'nnu', 'Nn3g20890' => 'nnu', 'Nn3g20962' => 'nnu', 'Nn4g25287' => 'nnu', 'Nn4g26314' => 'nnu', 'Nn5g29256' => 'nnu', 'Nn5g29747' => 'nnu', 'Nn5g29893' => 'nnu', 'Nn5g30764' => 'nnu', 'Nn6g31592' => 'nnu', 'Nn6g31593' => 'nnu', 'Nn6g31709' => 'nnu', 'Nn6g32004' => 'nnu', 'Nn6g32360' => 'nnu', 'Nn6g33669' => 'nnu', 'Nn6g33679' => 'nnu', 'Nn7g36170' => 'nnu', 'Nn7g37086' => 'nnu', 'Nn8g40887' => 'nnu', 'Oeu006456.1' => 'oeu', 'Oeu020877.2' => 'oeu', 'Oeu021910.1' => 'oeu', 'Oeu035071.1' => 'oeu', 'Oeu046373.1' => 'oeu', 'Oeu054702.2' => 'oeu', 'Os03g0643100' => 'osa', 'Os07g0115800' => 'osa', 'Os07g0210800' => 'osa', 'Os09g0122200' => 'osa', 'Os10g0468301' => 'osa', 'Peaxi162Scf00000g43014' => 'pax', 'Peaxi162Scf00439g00107' => 'pax', 'Peaxi162Scf00439g00520' => 'pax', 'Peaxi162Scf00544g00316' => 'pax', 'Peaxi162Scf00819g00021' => 'pax', 'PGR044G1967' => 'pgr', 'PGR102G2628' => 'pgr', 'PGR102G2926' => 'pgr', 'PGR119G2072' => 'pgr', 'PGR119G2519' => 'pgr', 'PGSC0003DMG400002070' => 'stu', 'PGSC0003DMG400012885' => 'stu', 'PGSC0003DMG400023886' => 'stu', 'PGSC0003DMG400036457' => 'stu', 'PGSC0003DMG400041107' => 'stu', 'Phvul.001G007600' => 'pvu', 'Phvul.001G210700' => 'pvu', 'Phvul.001G240000' => 'pvu', 'Phvul.002G106800' => 'pvu', 'Phvul.006G016600' => 'pvu', 'Phvul.007G114600' => 'pvu', 'Phvul.007G266500' => 'pvu', 'Phvul.009G086300' => 'pvu', 'Potri.002G023800' => 'ptr', 'Potri.002G200600' => 'ptr', 'Potri.004G135901' => 'ptr', 'Potri.004G172900' => 'ptr', 'Potri.006G265900' => 'ptr', 'Potri.013G025200' => 'ptr', 'Prupe.1G245200' => 'ppe', 'Prupe.1G287900' => 'ppe', 'Prupe.1G367200' => 'ppe', 'Prupe.1G367300' => 'ppe', 'Prupe.1G395600' => 'ppe', 'Prupe.4G256700' => 'ppe', 'Prupe.4G276100' => 'ppe', 'Prupe.5G014200' => 'ppe', 'Prupe.5G014400' => 'ppe', 'Prupe.5G049300' => 'ppe', 'Prupe.5G049400' => 'ppe', 'Prupe.6G167700' => 'ppe', 'Prupe.6G328700' => 'ppe', 'Prupe.7G027800' => 'ppe', 'Prupe.7G091300' => 'ppe', 'Prupe.7G171400' => 'ppe', 'Prupe.8G268300' => 'ppe', 'Psat0s3317g0120' => 'psa', 'Psat0s3985g0040' => 'psa', 'Psat0s4120g0080' => 'psa', 'Psat0s6520g0080' => 'psa', 'Psat0s94g0040' => 'psa', 'Psat1g106600' => 'psa', 'Psat1g190200' => 'psa', 'Psat2g130400' => 'psa', 'Psat2g153240' => 'psa', 'Psat5g127400' => 'psa', 'Psat5g143200' => 'psa', 'Psat5g151680' => 'psa', 'Psat6g003760' => 'psa', 'Psat6g111920' => 'psa', 'Psat6g155160' => 'psa', 'Psat7g003000' => 'psa', 'Psat7g015480' => 'psa', 'Psat7g176640' => 'psa', 'PSO017G0419' => 'pso', 'PSO017G6967' => 'pso', 'PSO063G0159' => 'pso', 'PSO063G3248' => 'pso', 'PSO063G3901' => 'pso', 'PSO063G6652' => 'pso', 'PSO170G0901' => 'pso', 'PSO170G1638' => 'pso', 'PSO170G2007' => 'pso', 'PSO170G3258' => 'pso', 'PSO170G5921' => 'pso', 'PSO170G6184' => 'pso', 'PSO170G6729' => 'pso', 'PSO210G2749' => 'pso', 'PSO223G0043' => 'pso', 'PSO339G0822' => 'pso', 'PSO339G4432' => 'pso', 'PSO339G4446' => 'pso', 'PSO339G4828' => 'pso', 'PSO384G0587' => 'pso', 'PSO384G1013' => 'pso', 'PSO384G1257' => 'pso', 'PSO384G1326' => 'pso', 'PSO384G2202' => 'pso', 'PSO384G2875' => 'pso', 'PSO423G0050' => 'pso', 'PSO478G0596' => 'pso', 'PSO478G4744' => 'pso', 'PSO541G0575' => 'pso', 'PSO541G4041' => 'pso', 'PSO541G5140' => 'pso', 'PSO541G5373' => 'pso', 'PSO541G5512' => 'pso', 'PSO541G6026' => 'pso', 'PSO541G6339' => 'pso', 'PSO541G6499' => 'pso', 'PSO543G0001' => 'pso', 'PSO561G0023' => 'pso', 'PSO578G0004' => 'pso', 'PSO675G0132' => 'pso', 'PSO675G3606' => 'pso', 'PSO675G3667' => 'pso', 'PSO675G4846' => 'pso', 'PSO675G6027' => 'pso', 'PSO675G7404' => 'pso', 'PSO675G9286' => 'pso', 'PSO716G0001' => 'pso', 'PSO724G0108' => 'pso', 'PSO782G0347' => 'pso', 'PSO782G0672' => 'pso', 'PSO782G1038' => 'pso', 'PSO782G1930' => 'pso', 'PSO782G2840' => 'pso', 'PSO782G4683' => 'pso', 'PSO782G4886' => 'pso', 'PSO832G1945' => 'pso', 'PSO832G3578' => 'pso', 'PSO832G3763' => 'pso', 'QL01p016350' => 'qlo', 'QL01p016365' => 'qlo', 'QL01p020889' => 'qlo', 'QL01p032454' => 'qlo', 'QL02p011365' => 'qlo', 'QL02p014819' => 'qlo', 'QL02p018541' => 'qlo', 'QL02p032784' => 'qlo', 'QL03p004675' => 'qlo', 'QL03p004678' => 'qlo', 'QL03p004681' => 'qlo', 'QL03p004820' => 'qlo', 'QL03p004858' => 'qlo', 'QL03p004879' => 'qlo', 'QL06p051064' => 'qlo', 'QL07p026924' => 'qlo', 'QL08p029855' => 'qlo', 'QL11p049281' => 'qlo', 'QL12p028664' => 'qlo', 'RcHm_v2.0_Chr1g0313081' => 'rch', 'RcHm_v2.0_Chr1g0330381' => 'rch', 'RcHm_v2.0_Chr2g0099061' => 'rch', 'RcHm_v2.0_Chr2g0139691' => 'rch', 'RcHm_v2.0_Chr3g0485151' => 'rch', 'RcHm_v2.0_Chr4g0405761' => 'rch', 'RcHm_v2.0_Chr6g0302651' => 'rch', 'RcHm_v2.0_Chr6g0302661' => 'rch', 'RcHm_v2.0_Chr7g0231381' => 'rch', 'Rhsim01G0288300' => 'rsi', 'Rhsim02G0216200' => 'rsi', 'Rhsim04G0014700' => 'rsi', 'Rhsim06G0022500' => 'rsi', 'Rhsim13G0129300' => 'rsi', 'Rhsim13G0204800' => 'rsi', 'Sabra02G0019400' => 'sbr', 'Sabra02G0158000' => 'sbr', 'Sabra04G0082100' => 'sbr', 'Sabra04G0115000' => 'sbr', 'Sabra06G0208500' => 'sbr', 'Sabra13G0026400' => 'sbr', 'SalBow8G0041' => 'sbo', 'Sc16g0002090' => 'sci', 'Sc16g0002100' => 'sci', 'Sc18g0005260' => 'sci', 'Sed0002116' => 'sed', 'Sed0003980' => 'sed', 'Sed0012912' => 'sed', 'Sed0013115' => 'sed', 'Sed0020609' => 'sed', 'Sed0022741' => 'sed', 'Sed0027236' => 'sed', 'SGA_v2.0_scaffold108G30994' => 'sas', 'SGA_v2.0_scaffold134G34688' => 'sas', 'SGA_v2.0_scaffold152G36847' => 'sas', 'SGA_v2.0_scaffold51G18858' => 'sas', 'Solyc02g061940.4' => 'sly', 'Solyc02g062220.2' => 'sly', 'Solyc02g080150.3' => 'sly', 'Solyc08g062420.3' => 'sly', 'Sopen02g012900' => 'spe', 'Sopen02g024870' => 'spe', 'Sopen08g017930' => 'spe', 'Sp4g03950' => 'spa', 'Sp5g30790' => 'spa', 'Sp6g02110' => 'spa', 'TAR133G0001' => 'tar', 'TAR362G0679' => 'tar', 'TAR376G0198' => 'tar', 'TAR381G0257' => 'tar', 'TAR381G0333' => 'tar', 'TAR381G0952' => 'tar', 'TAR383G0921' => 'tar', 'TAR526G0001' => 'tar', 'TAR617G0001' => 'tar', 'TAR623G1529' => 'tar', 'TAR626G0805' => 'tar', 'TAR628G0739' => 'tar', 'TAR628G1412' => 'tar', 'TAR629G1231' => 'tar', 'TAR629G1791' => 'tar', 'TAR633G2037' => 'tar', 'TAR636G0533' => 'tar', 'THA.LOC104809388' => 'tha', 'THA.LOC104819951' => 'tha', 'THA.LOC104820967' => 'tha', 'THA.LOC104825955' => 'tha', 'Thecc.01G014900' => 'tca', 'Thecc.01G307300' => 'tca', 'Thecc.02G063400' => 'tca', 'Thecc.05G108300' => 'tca', 'Thecc.05G306300' => 'tca', 'Thecc.08G042900' => 'tca', 'Thecc.09G014200' => 'tca', 'Thecc.09G253400' => 'tca', 'Thhalv10000052m.g' => 'esa', 'Thhalv10011017m.g' => 'esa', 'Thhalv10015294m.g' => 'esa', 'Thhalv10018949m.g' => 'esa', 'Thhalv10028655m.g' => 'esa', 'TPR.G10504' => 'tpr', 'TPR.G10520' => 'tpr', 'TPR.G13935' => 'tpr', 'TPR.G16629' => 'tpr', 'TPR.G16880' => 'tpr', 'TPR.G21227' => 'tpr', 'TPR.G26987' => 'tpr', 'TPR.G34347' => 'tpr', 'TPR.G37030' => 'tpr', 'TPR.G40119' => 'tpr', 'TWI09G0766' => 'twi', 'TWI09G1246' => 'twi', 'TWI12G0103' => 'twi', 'TWI12G0661' => 'twi', 'TWI34G1677' => 'twi', 'TWI56G0537' => 'twi', 'TWI56G0848' => 'twi', 'TWI56G0993' => 'twi', 'TWI56G1057' => 'twi', 'TWI59G0074' => 'twi', 'vmacro05024' => 'vma', 'vmacro05149' => 'vma', 'vmacro07033' => 'vma', 'vmacro11267' => 'vma', 'vmacro12400' => 'vma', 'vmacro15129' => 'vma', 'vmacro21719' => 'vma', 'vmacro21865' => 'vma', 'vmacro22150' => 'vma', 'vmacro23405' => 'vma', 'VMungo0251G2388' => 'vmu', 'VMungo0540G2239' => 'vmu', 'VMungo1215G0512' => 'vmu', 'VMungo1215G1134' => 'vmu', 'VMungo1309G2699' => 'vmu', 'VMungo1383G2642' => 'vmu', 'VMungo1383G2816' => 'vmu', 'VMungo1383G3280' => 'vmu' ) $gf_id = 'HOM05D000665' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000665' ) $data_identifier = 'HOM05D000665' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 2, 'aox' => (int) 19, 'arhy' => (int) 15, 'ath' => (int) 2, 'atr' => (int) 18, 'acertr' => (int) 7, 'cqu' => (int) 6, 'bca' => (int) 11, 'bol' => (int) 5, 'bra' => (int) 6, 'can' => (int) 3, 'cansat' => (int) 14, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 13, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 33, 'dca' => (int) 4, 'din' => (int) 23, 'dzi' => (int) 9, 'eca' => (int) 2, 'bvu' => (int) 3, 'egr' => (int) 25, 'fan' => (int) 19, 'fve' => (int) 7, 'gma' => (int) 46, 'ghi' => (int) 18, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 3, 'cav' => (int) 10, 'hma' => (int) 12, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 18, 'lonja' => (int) 9, 'lsa' => (int) 3, 'mes' => (int) 8, 'mbi' => (int) 21, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 9, 'nnu' => (int) 36, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppe' => (int) 17, 'psa' => (int) 18, 'pso' => (int) 58, 'qlo' => (int) 19, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 3, 'sed' => (int) 7, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 17, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 8 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3280' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1